how about
docker logs d05167f16b1f
Initializing database
2018-04-28T18:20:14.578848Z 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see doc umentation for more details).
2018-04-28T18:20:15.698529Z 0 [Warning] InnoDB: New log files created, LSN=45790
2018-04-28T18:20:15.952408Z 0 [Warning] InnoDB: Creating foreign key constraint system tables.
2018-04-28T18:20:16.020103Z 0 [Warning] No existing UUID has been found, so we a ssume that this is the first time that this server has been started. Generating a new UUID: ccac40c5-4b10-11e8-8f58-0242ac120002.
2018-04-28T18:20:16.022331Z 0 [Warning] Gtid table is not ready to be used. Tabl e 'mysql.gtid_executed' cannot be opened.
2018-04-28T18:20:16.023204Z 1 [Warning] root@localhost is created with an empty password ! Please consider switching off the --initialize-insecure option.
2018-04-28T18:20:16.878650Z 1 [Warning] 'user' entry 'root@localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:16.878748Z 1 [Warning] 'user' entry 'mysql.session@localhost' i gnored in --skip-name-resolve mode.
2018-04-28T18:20:16.878779Z 1 [Warning] 'user' entry 'mysql.sys@localhost' ignor ed in --skip-name-resolve mode.
2018-04-28T18:20:16.878812Z 1 [Warning] 'db' entry 'performance_schema mysql.ses sion@localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:16.878847Z 1 [Warning] 'db' entry 'sys mysql.sys@localhost' ign ored in --skip-name-resolve mode.
2018-04-28T18:20:16.878901Z 1 [Warning] 'proxies_priv' entry '@ root@localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:16.878961Z 1 [Warning] 'tables_priv' entry 'user mysql.session@ localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:16.878987Z 1 [Warning] 'tables_priv' entry 'sys_config mysql.sy s@localhost' ignored in --skip-name-resolve mode.
Database initialized
Initializing certificates
Generating a 2048 bit RSA private key
....+++
................................................................................ ....................+++
unable to write 'random state'
writing new private key to 'ca-key.pem'
-----
Generating a 2048 bit RSA private key
..+++
...................+++
unable to write 'random state'
writing new private key to 'server-key.pem'
-----
Generating a 2048 bit RSA private key
......................+++
..............+++
unable to write 'random state'
writing new private key to 'client-key.pem'
-----
Certificates initialized
MySQL init process in progress...
2018-04-28T18:20:19.899688Z 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see doc umentation for more details).
2018-04-28T18:20:19.907481Z 0 [Note] mysqld (mysqld 5.7.22) starting as process 88 ...
2018-04-28T18:20:19.913267Z 0 [Note] InnoDB: PUNCH HOLE support available
2018-04-28T18:20:19.913331Z 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2018-04-28T18:20:19.913354Z 0 [Note] InnoDB: Uses event mutexes
2018-04-28T18:20:19.913374Z 0 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2018-04-28T18:20:19.913393Z 0 [Note] InnoDB: Compressed tables use zlib 1.2.3
2018-04-28T18:20:19.913411Z 0 [Note] InnoDB: Using Linux native AIO
2018-04-28T18:20:19.913806Z 0 [Note] InnoDB: Number of pools: 1
2018-04-28T18:20:19.913959Z 0 [Note] InnoDB: Using CPU crc32 instructions
2018-04-28T18:20:19.921574Z 0 [Note] InnoDB: Initializing buffer pool, total siz e = 128M, instances = 1, chunk size = 128M
2018-04-28T18:20:19.942729Z 0 [Note] InnoDB: Completed initialization of buffer pool
2018-04-28T18:20:19.945182Z 0 [Note] InnoDB: If the mysqld execution user is aut horized, page cleaner thread priority can be changed. See the man page of setpri ority().
2018-04-28T18:20:19.957760Z 0 [Note] InnoDB: Highest supported file format is Ba rracuda.
2018-04-28T18:20:19.991212Z 0 [Note] InnoDB: Creating shared tablespace for temp orary tables
2018-04-28T18:20:19.991437Z 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
2018-04-28T18:20:20.035590Z 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.
2018-04-28T18:20:20.037144Z 0 [Note] InnoDB: 96 redo rollback segment(s) found. 96 redo rollback segment(s) are active.
2018-04-28T18:20:20.037203Z 0 [Note] InnoDB: 32 non-redo rollback segment(s) are active.
2018-04-28T18:20:20.041215Z 0 [Note] InnoDB: 5.7.22 started; log sequence number 2589156
2018-04-28T18:20:20.041773Z 0 [Note] Plugin 'FEDERATED' is disabled.
2018-04-28T18:20:20.043929Z 0 [Note] InnoDB: Loading buffer pool(s) from /var/li b/mysql/ib_buffer_pool
2018-04-28T18:20:20.054279Z 0 [Note] Found ca.pem, server-cert.pem and server-ke y.pem in data directory. Trying to enable SSL support using them.
2018-04-28T18:20:20.055362Z 0 [Warning] CA certificate ca.pem is self signed.
2018-04-28T18:20:20.055939Z 0 [Note] InnoDB: Buffer pool(s) load completed at 18 0428 18:20:20
2018-04-28T18:20:20.066637Z 0 [Warning] Insecure configuration for --pid-file: L ocation '/var/run/mysqld' in the path is accessible to all OS users. Consider ch oosing a different directory.
2018-04-28T18:20:20.069159Z 0 [Warning] 'user' entry 'root@localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:20.069361Z 0 [Warning] 'user' entry 'mysql.session@localhost' i gnored in --skip-name-resolve mode.
2018-04-28T18:20:20.069449Z 0 [Warning] 'user' entry 'mysql.sys@localhost' ignor ed in --skip-name-resolve mode.
2018-04-28T18:20:20.069489Z 0 [Warning] 'db' entry 'performance_schema mysql.ses sion@localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:20.069511Z 0 [Warning] 'db' entry 'sys mysql.sys@localhost' ign ored in --skip-name-resolve mode.
2018-04-28T18:20:20.069683Z 0 [Warning] 'proxies_priv' entry '@ root@localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:20.072632Z 0 [Warning] 'tables_priv' entry 'user mysql.session@ localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:20.072692Z 0 [Warning] 'tables_priv' entry 'sys_config mysql.sy s@localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:20.084728Z 0 [Note] Event Scheduler: Loaded 0 events
2018-04-28T18:20:20.085204Z 0 [Note] mysqld: ready for connections.
Version: '5.7.22' socket: '/var/run/mysqld/mysqld.sock' port: 0 MySQL Communi ty Server (GPL)
Warning: Unable to load '/usr/share/zoneinfo/iso3166.tab' as time zone. Skipping it.
Warning: Unable to load '/usr/share/zoneinfo/leap-seconds.list' as time zone. Sk ipping it.
Warning: Unable to load '/usr/share/zoneinfo/zone.tab' as time zone. Skipping it .
2018-04-28T18:20:25.864150Z 4 [Warning] 'user' entry 'root@localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:25.864263Z 4 [Warning] 'user' entry 'mysql.sys@localhost' ignor ed in --skip-name-resolve mode.
2018-04-28T18:20:25.864312Z 4 [Warning] 'db' entry 'performance_schema mysql.ses sion@localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:25.864385Z 4 [Warning] 'db' entry 'sys mysql.sys@localhost' ign ored in --skip-name-resolve mode.
2018-04-28T18:20:25.864431Z 4 [Warning] 'proxies_priv' entry '@ root@localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:25.864495Z 4 [Warning] 'tables_priv' entry 'user mysql.session@ localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:25.864523Z 4 [Warning] 'tables_priv' entry 'sys_config mysql.sy s@localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:25.878199Z 0 [Note] Giving 0 client threads a chance to die gra cefully
2018-04-28T18:20:25.878262Z 0 [Note] Shutting down slave threads
2018-04-28T18:20:25.878285Z 0 [Note] Forcefully disconnecting 0 remaining client s
2018-04-28T18:20:25.878306Z 0 [Note] Event Scheduler: Purging the queue. 0 event s
2018-04-28T18:20:25.878801Z 0 [Note] Binlog end
2018-04-28T18:20:25.879586Z 0 [Note] Shutting down plugin 'ngram'
2018-04-28T18:20:25.879737Z 0 [Note] Shutting down plugin 'BLACKHOLE'
2018-04-28T18:20:25.879764Z 0 [Note] Shutting down plugin 'partition'
2018-04-28T18:20:25.879808Z 0 [Note] Shutting down plugin 'ARCHIVE'
2018-04-28T18:20:25.879827Z 0 [Note] Shutting down plugin 'MEMORY'
2018-04-28T18:20:25.879847Z 0 [Note] Shutting down plugin 'INNODB_SYS_VIRTUAL'
2018-04-28T18:20:25.879864Z 0 [Note] Shutting down plugin 'INNODB_SYS_DATAFILES'
2018-04-28T18:20:25.879881Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESPACE S'
2018-04-28T18:20:25.879897Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN_CO LS'
2018-04-28T18:20:25.879912Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN'
2018-04-28T18:20:25.880054Z 0 [Note] Shutting down plugin 'INNODB_SYS_FIELDS'
2018-04-28T18:20:25.880078Z 0 [Note] Shutting down plugin 'INNODB_SYS_COLUMNS'
2018-04-28T18:20:25.880094Z 0 [Note] Shutting down plugin 'INNODB_SYS_INDEXES'
2018-04-28T18:20:25.880156Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESTATS '
2018-04-28T18:20:25.880177Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLES'
2018-04-28T18:20:25.880192Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_TABLE '
2018-04-28T18:20:25.880208Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_CACHE '
2018-04-28T18:20:25.880224Z 0 [Note] Shutting down plugin 'INNODB_FT_CONFIG'
2018-04-28T18:20:25.880590Z 0 [Note] Shutting down plugin 'INNODB_FT_BEING_DELET ED'
2018-04-28T18:20:25.880615Z 0 [Note] Shutting down plugin 'INNODB_FT_DELETED'
2018-04-28T18:20:25.880632Z 0 [Note] Shutting down plugin 'INNODB_FT_DEFAULT_STO PWORD'
2018-04-28T18:20:25.880673Z 0 [Note] Shutting down plugin 'INNODB_METRICS'
2018-04-28T18:20:25.880691Z 0 [Note] Shutting down plugin 'INNODB_TEMP_TABLE_INF O'
2018-04-28T18:20:25.880707Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_POOL_ST ATS'
2018-04-28T18:20:25.880724Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE_LR U'
2018-04-28T18:20:25.880780Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE'
2018-04-28T18:20:25.880801Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX_ RESET'
2018-04-28T18:20:25.880856Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX'
2018-04-28T18:20:25.880877Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM_RESET'
2018-04-28T18:20:25.880893Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM'
2018-04-28T18:20:25.880909Z 0 [Note] Shutting down plugin 'INNODB_CMP_RESET'
2018-04-28T18:20:25.880925Z 0 [Note] Shutting down plugin 'INNODB_CMP'
2018-04-28T18:20:25.880940Z 0 [Note] Shutting down plugin 'INNODB_LOCK_WAITS'
2018-04-28T18:20:25.880956Z 0 [Note] Shutting down plugin 'INNODB_LOCKS'
2018-04-28T18:20:25.880971Z 0 [Note] Shutting down plugin 'INNODB_TRX'
2018-04-28T18:20:25.881128Z 0 [Note] Shutting down plugin 'InnoDB'
2018-04-28T18:20:25.881224Z 0 [Note] InnoDB: FTS optimize thread exiting.
2018-04-28T18:20:25.881467Z 0 [Note] InnoDB: Starting shutdown...
2018-04-28T18:20:25.981957Z 0 [Note] InnoDB: Dumping buffer pool(s) to /var/lib/ mysql/ib_buffer_pool
2018-04-28T18:20:25.982633Z 0 [Note] InnoDB: Buffer pool(s) dump completed at 18 0428 18:20:25
2018-04-28T18:20:27.292584Z 0 [Note] InnoDB: Shutdown completed; log sequence nu mber 12193308
2018-04-28T18:20:27.293330Z 0 [Note] InnoDB: Removed temporary tablespace data f ile: "ibtmp1"
2018-04-28T18:20:27.293482Z 0 [Note] Shutting down plugin 'MyISAM'
2018-04-28T18:20:27.293548Z 0 [Note] Shutting down plugin 'MRG_MYISAM'
2018-04-28T18:20:27.293588Z 0 [Note] Shutting down plugin 'CSV'
2018-04-28T18:20:27.293606Z 0 [Note] Shutting down plugin 'PERFORMANCE_SCHEMA'
2018-04-28T18:20:27.293649Z 0 [Note] Shutting down plugin 'sha256_password'
2018-04-28T18:20:27.293675Z 0 [Note] Shutting down plugin 'mysql_native_password '
2018-04-28T18:20:27.293975Z 0 [Note] Shutting down plugin 'binlog'
2018-04-28T18:20:27.295173Z 0 [Note] mysqld: Shutdown complete
MySQL init process done. Ready for start up.
2018-04-28T18:20:27.561704Z 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see doc umentation for more details).
2018-04-28T18:20:27.565916Z 0 [Note] mysqld (mysqld 5.7.22) starting as process 1 ...
2018-04-28T18:20:27.581875Z 0 [Note] InnoDB: PUNCH HOLE support available
2018-04-28T18:20:27.582061Z 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2018-04-28T18:20:27.582100Z 0 [Note] InnoDB: Uses event mutexes
2018-04-28T18:20:27.582140Z 0 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2018-04-28T18:20:27.582159Z 0 [Note] InnoDB: Compressed tables use zlib 1.2.3
2018-04-28T18:20:27.582178Z 0 [Note] InnoDB: Using Linux native AIO
2018-04-28T18:20:27.582894Z 0 [Note] InnoDB: Number of pools: 1
2018-04-28T18:20:27.583181Z 0 [Note] InnoDB: Using CPU crc32 instructions
2018-04-28T18:20:27.587805Z 0 [Note] InnoDB: Initializing buffer pool, total siz e = 128M, instances = 1, chunk size = 128M
2018-04-28T18:20:27.604328Z 0 [Note] InnoDB: Completed initialization of buffer pool
2018-04-28T18:20:27.607841Z 0 [Note] InnoDB: If the mysqld execution user is aut horized, page cleaner thread priority can be changed. See the man page of setpri ority().
2018-04-28T18:20:27.621769Z 0 [Note] InnoDB: Highest supported file format is Ba rracuda.
2018-04-28T18:20:27.646979Z 0 [Note] InnoDB: Creating shared tablespace for temp orary tables
2018-04-28T18:20:27.647101Z 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
2018-04-28T18:20:27.694897Z 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.
2018-04-28T18:20:27.696539Z 0 [Note] InnoDB: 96 redo rollback segment(s) found. 96 redo rollback segment(s) are active.
2018-04-28T18:20:27.696594Z 0 [Note] InnoDB: 32 non-redo rollback segment(s) are active.
2018-04-28T18:20:27.697368Z 0 [Note] InnoDB: Waiting for purge to start
2018-04-28T18:20:27.747651Z 0 [Note] InnoDB: 5.7.22 started; log sequence number 12193308
2018-04-28T18:20:27.748244Z 0 [Note] Plugin 'FEDERATED' is disabled.
2018-04-28T18:20:27.748569Z 0 [Note] InnoDB: Loading buffer pool(s) from /var/li b/mysql/ib_buffer_pool
2018-04-28T18:20:27.760257Z 0 [Note] Found ca.pem, server-cert.pem and server-ke y.pem in data directory. Trying to enable SSL support using them.
2018-04-28T18:20:27.760722Z 0 [Warning] CA certificate ca.pem is self signed.
2018-04-28T18:20:27.764237Z 0 [Note] Server hostname (bind-address): '*'; port: 3306
2018-04-28T18:20:27.764524Z 0 [Note] IPv6 is available.
2018-04-28T18:20:27.764676Z 0 [Note] - '::' resolves to '::';
2018-04-28T18:20:27.764727Z 0 [Note] Server socket created on IP: '::'.
2018-04-28T18:20:27.768375Z 0 [Note] InnoDB: Buffer pool(s) load completed at 18 0428 18:20:27
2018-04-28T18:20:27.768848Z 0 [Warning] Insecure configuration for --pid-file: L ocation '/var/run/mysqld' in the path is accessible to all OS users. Consider ch oosing a different directory.
2018-04-28T18:20:27.772682Z 0 [Warning] 'user' entry 'root@localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:27.772780Z 0 [Warning] 'user' entry 'mysql.sys@localhost' ignor ed in --skip-name-resolve mode.
2018-04-28T18:20:27.772821Z 0 [Warning] 'db' entry 'performance_schema mysql.ses sion@localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:27.772886Z 0 [Warning] 'db' entry 'sys mysql.sys@localhost' ign ored in --skip-name-resolve mode.
2018-04-28T18:20:27.772914Z 0 [Warning] 'proxies_priv' entry '@ root@localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:27.779197Z 0 [Warning] 'tables_priv' entry 'user mysql.session@ localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:27.779269Z 0 [Warning] 'tables_priv' entry 'sys_config mysql.sy s@localhost' ignored in --skip-name-resolve mode.
2018-04-28T18:20:27.829512Z 0 [Note] Event Scheduler: Loaded 0 events
2018-04-28T18:20:27.829855Z 0 [Note] mysqld: ready for connections.
Version: '5.7.22' socket: '/var/run/mysqld/mysqld.sock' port: 3306 MySQL Comm unity Server (GPL)
2018-04-28T18:21:36.864024Z 0 [Note] Giving 0 client threads a chance to die gra cefully
2018-04-28T18:21:36.864054Z 0 [Note] Shutting down slave threads
2018-04-28T18:21:36.864059Z 0 [Note] Forcefully disconnecting 0 remaining client s
2018-04-28T18:21:36.864068Z 0 [Note] Event Scheduler: Purging the queue. 0 event s
2018-04-28T18:21:36.864103Z 0 [Note] Binlog end
2018-04-28T18:21:36.865478Z 0 [Note] Shutting down plugin 'ngram'
2018-04-28T18:21:36.865527Z 0 [Note] Shutting down plugin 'BLACKHOLE'
2018-04-28T18:21:36.865548Z 0 [Note] Shutting down plugin 'partition'
2018-04-28T18:21:36.865566Z 0 [Note] Shutting down plugin 'ARCHIVE'
2018-04-28T18:21:36.865581Z 0 [Note] Shutting down plugin 'MEMORY'
2018-04-28T18:21:36.865599Z 0 [Note] Shutting down plugin 'INNODB_SYS_VIRTUAL'
2018-04-28T18:21:36.865615Z 0 [Note] Shutting down plugin 'INNODB_SYS_DATAFILES'
2018-04-28T18:21:36.865632Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESPACE S'
2018-04-28T18:21:36.865648Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN_CO LS'
2018-04-28T18:21:36.865685Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN'
2018-04-28T18:21:36.865771Z 0 [Note] Shutting down plugin 'INNODB_SYS_FIELDS'
2018-04-28T18:21:36.865791Z 0 [Note] Shutting down plugin 'INNODB_SYS_COLUMNS'
2018-04-28T18:21:36.865807Z 0 [Note] Shutting down plugin 'INNODB_SYS_INDEXES'
2018-04-28T18:21:36.865824Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESTATS '
2018-04-28T18:21:36.865864Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLES'
2018-04-28T18:21:36.865880Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_TABLE '
2018-04-28T18:21:36.865896Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_CACHE '
2018-04-28T18:21:36.865911Z 0 [Note] Shutting down plugin 'INNODB_FT_CONFIG'
2018-04-28T18:21:36.865927Z 0 [Note] Shutting down plugin 'INNODB_FT_BEING_DELET ED'
2018-04-28T18:21:36.865943Z 0 [Note] Shutting down plugin 'INNODB_FT_DELETED'
2018-04-28T18:21:36.865958Z 0 [Note] Shutting down plugin 'INNODB_FT_DEFAULT_STO PWORD'
2018-04-28T18:21:36.865974Z 0 [Note] Shutting down plugin 'INNODB_METRICS'
2018-04-28T18:21:36.865996Z 0 [Note] Shutting down plugin 'INNODB_TEMP_TABLE_INF O'
2018-04-28T18:21:36.866026Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_POOL_ST ATS'
2018-04-28T18:21:36.866042Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE_LR U'
2018-04-28T18:21:36.866058Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE'
2018-04-28T18:21:36.866081Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX_ RESET'
2018-04-28T18:21:36.866097Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX'
2018-04-28T18:21:36.866113Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM_RESET'
2018-04-28T18:21:36.866129Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM'
2018-04-28T18:21:36.866145Z 0 [Note] Shutting down plugin 'INNODB_CMP_RESET'
2018-04-28T18:21:36.866179Z 0 [Note] Shutting down plugin 'INNODB_CMP'
2018-04-28T18:21:36.866196Z 0 [Note] Shutting down plugin 'INNODB_LOCK_WAITS'
2018-04-28T18:21:36.866212Z 0 [Note] Shutting down plugin 'INNODB_LOCKS'
2018-04-28T18:21:36.866228Z 0 [Note] Shutting down plugin 'INNODB_TRX'
2018-04-28T18:21:36.866243Z 0 [Note] Shutting down plugin 'InnoDB'
2018-04-28T18:21:36.867007Z 0 [Note] InnoDB: FTS optimize thread exiting.
2018-04-28T18:21:36.867146Z 0 [Note] InnoDB: Starting shutdown...
2018-04-28T18:21:36.967473Z 0 [Note] InnoDB: Dumping buffer pool(s) to /var/lib/ mysql/ib_buffer_pool
2018-04-28T18:21:36.967748Z 0 [Note] InnoDB: Buffer pool(s) dump completed at 18 0428 18:21:36
2018-04-28T18:21:38.282482Z 0 [Note] InnoDB: Shutdown completed; log sequence nu mber 40839846
2018-04-28T18:21:38.282945Z 0 [Note] InnoDB: Removed temporary tablespace data f ile: "ibtmp1"
2018-04-28T18:21:38.282997Z 0 [Note] Shutting down plugin 'MyISAM'
2018-04-28T18:21:38.283025Z 0 [Note] Shutting down plugin 'MRG_MYISAM'
2018-04-28T18:21:38.283067Z 0 [Note] Shutting down plugin 'CSV'
2018-04-28T18:21:38.283083Z 0 [Note] Shutting down plugin 'PERFORMANCE_SCHEMA'
2018-04-28T18:21:38.283123Z 0 [Note] Shutting down plugin 'sha256_password'
2018-04-28T18:21:38.283161Z 0 [Note] Shutting down plugin 'mysql_native_password '
2018-04-28T18:21:38.283295Z 0 [Note] Shutting down plugin 'binlog'
2018-04-28T18:21:38.284312Z 0 [Note] mysqld: Shutdown complete
2018-06-12T19:12:16.861328Z 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see doc umentation for more details).
2018-06-12T19:12:16.862868Z 0 [Note] mysqld (mysqld 5.7.22) starting as process 1 ...
2018-06-12T19:12:16.867103Z 0 [Note] InnoDB: PUNCH HOLE support available
2018-06-12T19:12:16.867162Z 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2018-06-12T19:12:16.867185Z 0 [Note] InnoDB: Uses event mutexes
2018-06-12T19:12:16.867205Z 0 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
2018-06-12T19:12:16.867223Z 0 [Note] InnoDB: Compressed tables use zlib 1.2.3
2018-06-12T19:12:16.867241Z 0 [Note] InnoDB: Using Linux native AIO
2018-06-12T19:12:16.868450Z 0 [Note] InnoDB: Number of pools: 1
2018-06-12T19:12:16.870631Z 0 [Note] InnoDB: Using CPU crc32 instructions
2018-06-12T19:12:16.872342Z 0 [Note] InnoDB: Initializing buffer pool, total siz e = 128M, instances = 1, chunk size = 128M
2018-06-12T19:12:16.881099Z 0 [Note] InnoDB: Completed initialization of buffer pool
2018-06-12T19:12:16.883847Z 0 [Note] InnoDB: If the mysqld execution user is aut horized, page cleaner thread priority can be changed. See the man page of setpri ority().
2018-06-12T19:12:16.903051Z 0 [Note] InnoDB: Highest supported file format is Ba rracuda.
2018-06-12T19:12:17.016466Z 0 [Note] InnoDB: Creating shared tablespace for temp orary tables
2018-06-12T19:12:17.016616Z 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
2018-06-12T19:12:17.079635Z 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.
2018-06-12T19:12:17.080620Z 0 [Note] InnoDB: 96 redo rollback segment(s) found. 96 redo rollback segment(s) are active.
2018-06-12T19:12:17.080675Z 0 [Note] InnoDB: 32 non-redo rollback segment(s) are active.
2018-06-12T19:12:17.081505Z 0 [Note] InnoDB: Waiting for purge to start
2018-06-12T19:12:17.131756Z 0 [Note] InnoDB: 5.7.22 started; log sequence number 40839846
2018-06-12T19:12:17.132230Z 0 [Note] Plugin 'FEDERATED' is disabled.
2018-06-12T19:12:17.132539Z 0 [Note] InnoDB: Loading buffer pool(s) from /var/li b/mysql/ib_buffer_pool
2018-06-12T19:12:17.148606Z 0 [Note] Found ca.pem, server-cert.pem and server-ke y.pem in data directory. Trying to enable SSL support using them.
2018-06-12T19:12:17.149500Z 0 [Warning] CA certificate ca.pem is self signed.
2018-06-12T19:12:17.153243Z 0 [Note] Server hostname (bind-address): '*'; port: 3306
2018-06-12T19:12:17.153326Z 0 [Note] IPv6 is available.
2018-06-12T19:12:17.153353Z 0 [Note] - '::' resolves to '::';
2018-06-12T19:12:17.153396Z 0 [Note] Server socket created on IP: '::'.
2018-06-12T19:12:17.156349Z 0 [Warning] Insecure configuration for --pid-file: L ocation '/var/run/mysqld' in the path is accessible to all OS users. Consider ch oosing a different directory.
2018-06-12T19:12:17.303192Z 0 [Warning] 'user' entry 'root@localhost' ignored in --skip-name-resolve mode.
2018-06-12T19:12:17.303311Z 0 [Warning] 'user' entry 'mysql.sys@localhost' ignor ed in --skip-name-resolve mode.
2018-06-12T19:12:17.303586Z 0 [Warning] 'db' entry 'performance_schema mysql.ses sion@localhost' ignored in --skip-name-resolve mode.
2018-06-12T19:12:17.303634Z 0 [Warning] 'db' entry 'sys mysql.sys@localhost' ign ored in --skip-name-resolve mode.
error from daemon in stream: Error grabbing logs: invalid character 'l' after ob ject key:value pairthe last error is 2018-06-12, probably should be something more recent if it was working as recently as a few days ago
yes, was definitely working as of last week. what should i be trying to do at this point?
how about
docker logs --tail d05167f16b1fmaybe i’m typing that in wrong, i get the error that “docker logs” requires exactly 1 argument(s).
right, try 20 so
docker logs --tail 20 d05167f16b1f
root@ip-172-31-31-206:~# docker logs --tail 20 d05167f16b1f
2019-09-18T13:38:35.439327Z 0 [Note] InnoDB: Using CPU crc32 instructions
2019-09-18T13:38:35.441269Z 0 [Note] InnoDB: Initializing buffer pool, total size = 128M, instances = 1, chunk size = 128M
2019-09-18T13:38:35.453940Z 0 [Note] InnoDB: Completed initialization of buffer pool
2019-09-18T13:38:35.458411Z 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority().
2019-09-18T13:38:35.490242Z 0 [Note] InnoDB: Highest supported file format is Barracuda.
2019-09-18T13:38:35.681606Z 0 [Note] InnoDB: Creating shared tablespace for temporary tables
2019-09-18T13:38:35.681677Z 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
2019-09-18T13:38:35.681837Z 0 [Warning] InnoDB: Retry attempts for writing partial data failed.
2019-09-18T13:38:35.681849Z 0 [ERROR] InnoDB: Write to file ./ibtmp1failed at offset 0, 1048576 bytes should have been written, only 0 were written. Operating system error number 28. Check that your OS and file system support files of this size. Check also that the disk is not full or a disk quota exceeded.
2019-09-18T13:38:35.681859Z 0 [ERROR] InnoDB: Error number 28 means 'No space left on device'
2019-09-18T13:38:35.681863Z 0 [Note] InnoDB: Some operating system error numbers are described at http://dev.mysql.com/doc/refman/5.7/en/operating-system-error-codes.html
2019-09-18T13:38:35.681867Z 0 [ERROR] InnoDB: Could not set the file size of './ibtmp1'. Probably out of disk space
2019-09-18T13:38:35.681871Z 0 [ERROR] InnoDB: Unable to create the shared innodb_temporary
2019-09-18T13:38:35.681874Z 0 [ERROR] InnoDB: Plugin initialization aborted with error Generic error
2019-09-18T13:38:36.182872Z 0 [Note] InnoDB: Removed temporary tablespace data file: "ibtmp1"
2019-09-18T13:38:36.182900Z 0 [ERROR] Plugin 'InnoDB' init function returned error.
2019-09-18T13:38:36.182905Z 0 [ERROR] Plugin 'InnoDB' registration as a STORAGE ENGINE failed.
2019-09-18T13:38:36.182910Z 0 [ERROR] Failed to initialize builtin plugins.
2019-09-18T13:38:36.182912Z 0 [ERROR] Abortingok, there it is, no more room on the storage, maybe @jesdynf has some easy to follow advice on how to create more room on the mysql volume?
ah, thanks for trouble shooting that, any additional help would be greatly appreciated!
First thing I’d try is connecting to the OpenEMR docker and seeing if there’s an issue with your Apache logfiles – there might be a lot of them, if there’s no rotation.
Failing this, you can increase the size of the EBS volume attached to the EC2 instance, and then extend the file system to make use of the additional space. See the Amazon documentation (or the support forums) for more information about this process.
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so @susmitahunter, reconnect to the openemr docker and run the below to see the size of the files
/var/www/localhost/htdocs/openemr # ls -lrt /var/log/apache2/
/var/www/localhost/htdocs/openemr # ls -lrt /var/log/apache2/
total 359932
-rw-r--r-- 1 root wheel 0 Apr 28 2018 ssl_request.log
-rw-r--r-- 1 root wheel 0 Apr 28 2018 ssl_access.log
-rw-r--r-- 1 root wheel 6908 Sep 18 13:38 ssl_error.log
-rw-r--r-- 1 root wheel 88104960 Sep 20 12:43 error.log
-rw-r--r-- 1 root wheel 280445360 Sep 20 13:58 access.logtry this
/var/www/localhost/htdocs/openemr # : > /var/log/apache2/access.log
the command includes the :
: > /var/log/apache2/access.log
I put in the command as you have it, no errors, but it didn’t output anything
rerun the long list,
/var/www/localhost/htdocs/openemr # ls -lrt /var/log/apache2/
total 86052
-rw-r--r-- 1 root wheel 0 Apr 28 2018 ssl_request.log
-rw-r--r-- 1 root wheel 0 Apr 28 2018 ssl_access.log
-rw-r--r-- 1 root wheel 6908 Sep 18 13:38 ssl_error.log
-rw-r--r-- 1 root wheel 88104960 Sep 20 12:43 error.log
-rw-r--r-- 1 root wheel 0 Sep 20 14:31 access.logdo the same with the error_log
: > /var/log/apache2/error.log
and then exit back to the bash root shell and run
root@ip-10-0-1-118:~# docker restart d05167f16b1f
and you should be up and running again 
ps it might be docker start d05167f16b1f since it’s not running
1 Like
omg, it works. I cannot express how thankful I am, I could kiss you, this has been such a burden operating for the past week without it. Thank you so very much for practically holding my hands through this process.
I honestly have just been copying the commands through with only a vague idea of what/why I was doing it… but I take it the log file just got too large and that was why there was a space issue? I also had a problem doing the backup through openemr last wednesday, and I’m guessing that was related to this as well.
Again, thank you so much, you’re a life saver! I know it’s tedious to spell things out for me through this, so thank you again!
1 Like
no prob, 
, it’s going to be helpful for others who encounter this issue since the logs aren’t rotating yet. Also, in the not too distant future we should help you to a larger ec2 instance since your database is healthy and growing
1 Like